Class Specialization
EditDistance
Edit distance scoring scheme.
|  |  | ||||||
| EditDistance | |||||||
Include Headers
seqan/score.h
Parameters
|  The value type. Default: int | 
Remarks
 Semantically equivalent to a default contructed Score<int, Simple>.
Specialization of
Metafunctions
| Type of the default findBegin pattern specialization, given a score. (Score) | |
| Type of the items in the container. (Score) | 
Functions
| Given a multiple alignment, this function calculates all kinds of alignment statistics. (Score) | |
| Computes the best global alignment of the two sequences. (Score) | |
| Computes a global multiple alignment. (Score) | |
| Computes the best local alignment of two sequences. (Score) | |
| Refines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the segments partly overlap. They are either identical (fully overlapping) or non-overlapping. (Score) | |
| Computes multiple local alignments of two sequences. (Score) | |
| Returns the score for aligning the characters | |
| Returns the score for aligning the characters | |
| Given a multiple alignment, this function calculates the sum-of-pairs score. (Score) | 
Shortcuts
| Edit distance scoring scheme. | 
Example Programs
See Also
SeqAn - Sequence Analysis Library - www.seqan.de