Member Function
Score
Constructor
Parameters
|  Other Score object. (copy constructor) | |
|  TValue object. Default: 0 | |
|  TValue object. Default: -1 | |
|  TValue object. Default: -1 Remarks: The score for a single blank in a gap (linear gap costs). | |
|  TValue object. Default:  Remarks: The score for the first blank in a gap (affine gap costs). | 
Remarks
 If both gap and gap_open are specified, the total score of a length n  gap is gap_open (n-1)*gap .
Note: Usually mismatch , gap , and gap_open  are negative values.
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